SNP Profiles of SPEC 160/9 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	CC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
1._SPEC_160_/9	_	_	AC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
2._SPEC_160_/9	_	_	AC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
3._SPEC_160_/9	_	_	AC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
4._SPEC_160_/9	_	_	AC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
5._SPEC_160_/9	_	_	AC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
6._RUQ_51	_	_	AC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
7._GC-08-267-8-39	CT	CC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
8._GC-08-267-8-39	CT	CC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
9._GC-08-267-8-39	CT	CC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
10._GC-08-267-8-39	CT	CC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
11._GC-08-267-8-39	CT	CC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
12._SPEC_160_/9	_	_	AC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
13._RUQ_51	_	_	AC	_	_	_	_	_	AG	_	AG	_	_	_
14._RUQ_51	AG	CC	AC	AC	AG	AG	AC	CG	AG	AG	AG	AG	AT	CG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	CC	CT	GT	CC	AA	CC	CC	CT	GT	AG	GT	AC	CG
1._SPEC_160_/9	GG	CC	CT	GT	CC	AC	_	CC	_	GT	_	_	_	CG
2._SPEC_160_/9	GG	CC	CT	GT	CC	AC	_	CC	_	GT	_	_	_	CG
3._SPEC_160_/9	GG	CC	CT	GT	CC	AC	_	CC	_	GT	_	_	_	CG
4._SPEC_160_/9	GG	CC	CT	GT	CC	AC	_	CC	_	GT	_	_	_	CG
5._SPEC_160_/9	GG	CC	CT	GT	CC	AC	_	CC	_	GT	_	_	_	CG
6._RUQ_51	GG	CC	CT	GT	CC	AC	_	CC	_	GT	_	_	_	CG
7._GC-08-267-8-39	GG	CC	CT	GT	CC	AC	CC	CC	CT	GT	AG	GT	AC	CG
8._GC-08-267-8-39	GG	CC	CT	GT	CC	AC	CC	CC	CT	GT	AG	GT	AC	CG
9._GC-08-267-8-39	GG	CC	CT	GT	CC	AC	CC	CC	CT	GT	AG	GT	AC	CG
10._GC-08-267-8-39	GG	CC	CT	GT	CC	AC	CC	CC	CT	GT	AG	GT	AC	CG
11._GC-08-267-8-39	GG	CC	CT	GT	CC	AC	CC	CC	CT	GT	AG	GT	AC	CG
12._SPEC_160_/9	_	CC	CT	_	CC	AT	_	CC	_	GT	_	_	_	CG
13._RUQ_51	_	AC	_	_	CC	AC	CC	_	CT	GT	AG	_	AC	CG
14._RUQ_51	_	CC	_	AC	CC	AC	GG	GG	_	AC	AG	AC	AC	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	CC	AG	CC	CT	GT	AG	AA	GG	CT	CT	CT	CG	GG
1._SPEC_160_/9	_	CC	AG	_	CT	_	_	_	GG	_	_	CT	CG	GG
2._SPEC_160_/9	_	CC	AG	_	CT	_	_	_	GG	_	_	CT	CG	GG
3._SPEC_160_/9	_	CC	AG	_	CT	_	_	_	GG	_	_	CT	CG	GG
4._SPEC_160_/9	_	CC	AG	_	CT	_	_	_	GG	_	_	CT	CG	GG
5._SPEC_160_/9	_	CC	AG	_	CT	_	_	_	GG	_	_	CT	CG	GG
6._RUQ_51	_	CC	AG	_	CT	_	_	_	GG	_	_	CT	_	GG
7._GC-08-267-8-39	CG	CC	AG	CT	CT	GT	AG	AA	GG	TT	CT	CT	CG	GG
8._GC-08-267-8-39	CG	CC	AG	CT	CT	GT	AG	AA	GG	TT	CT	CT	CG	GG
9._GC-08-267-8-39	CG	CC	AG	CT	CT	GT	AG	AA	GG	TT	CT	CT	CG	GG
10._GC-08-267-8-39	CG	CC	AG	CT	CT	GT	AG	AA	GG	TT	CT	CT	CG	GG
11._GC-08-267-8-39	CG	CC	AG	CT	CT	GT	AG	_	GG	TT	CT	CT	CG	GG
12._SPEC_160_/9	_	CC	_	_	_	_	_	_	GG	_	_	CT	GG	GG
13._RUQ_51	_	_	AG	CT	_	_	_	_	GG	_	_	_	CG	_
14._RUQ_51	_	GG	AG	_	AG	AC	AG	_	_	AG	AG	AG	CC	GG

Input profile: SPEC_160_/9 RUQ_51

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._SPEC_160_/9

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8839 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

2._SPEC_160_/9

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8839 2

Dapeng Zhang, 2016

3._SPEC_160_/9

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8839 3

Dapeng Zhang, 2016

4._SPEC_160_/9

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8839 4

Dapeng Zhang, 2016

5._SPEC_160_/9

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8839 5

Dapeng Zhang, 2016

6._SPEC_160_/9 RUQ_51

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

7._SPEC_160_/9 GC-08-267-8-39

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._SPEC_160_/9 GC-08-267-8-39

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

9._SPEC_160_/9 GC-08-267-8-39

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

10._SPEC_160_/9 GC-08-267-8-39

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

11._SPEC_160_/9 GC-08-267-8-39

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

12._SPEC_160_/9

95 %
20 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña, Lot 8, Row 24 4_6

Dapeng Zhang, 2016

13._SPEC_160_/9 RUQ_51

90.6 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

14._SPEC_160_/9 RUQ_51

54.3 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484